REFERENCES

Ahasan MS, Picard J, Elliot L, Kinobe R, Owens L, Ariel E (2017) Evidence of antibiotic resistance in Enterobacteriales isolated from green sea turtles, Chelonia mydas on the Great Barrier Reef.

Alonso CA, Gonzalez-Barrio D, Tenorio C, Ruiz-Fons F, Tores C (2016) Antimicrobial resistance in faecal Escherichia coli isolates from farmed red deer and wild small mammals: detection of a multire­sistant E. coli producing extended-spectrum beta-lactamase. Com­parative Immunology, Microbiology and Infectious Diseases 45, 34-39. doi:10.1016/j.cimid.2016.02.003

Australian Commission on Safety and Quality in Health Care (ACSQHC) (2024) CARAlert annual report: 2023. Sydney, Aus­tralia.

Ben Zakour NL, Alsheikh-Hussain AS, Ashcroft MM, Khanh Nhu NT, Roberts LW, Stanton-Cook M, Schembri MA, Beatson SA (2016) Sequential acquisition of virulence and fluoroquinolone resistance has shaped the evolution of Escherichia coli ST131. mBio 7, e00347- 16. doi:10.1128/mbio.00347-16

Blair JMA, Webber MA, Baylay AJ, Ogbolu DJ, Piddock LVJ (2015) Molecular mechanisms of antibiotic resistance. Nature Reviews: Microbiology 13, 42-51. doi:10.1038/nrmicro3380

Blyton MDJ, Pi H, Vangchhia B, Abraham S, Trott DJ, Johnson JR, Gordon DM (2015) Genetic structure and antimicrobial resistance of Escherichia coli and cryptic vlades in birds with diverse human associations. Applied and Environmental Microbiology 81, 5123­5133. doi:10.1128/AEM.00861-15

Bouza E, Cercenado E (2002) Klebsiella and Enterobacter: antibiotic resistance and treatment implications. Seminars in Respiratory Infections 17, 215-230. doi:10.1053/srin.2002.34693

Carroll D, Wang J, Fanning S, Mcmahon BJ (2015) Antimicrobial resistance in wildlife: implications for public health. Zoonoses and Public Health 62, 534-542.

Chen MM, Boardman WS, Smith I, Goodmans AE, Brown MH (2015) Characterisation of beta-lactam resistance mediated by blaZ in staphy­lococci recovered from captive and wild wallabies. Journal of Global Antimicrobial Resistance 3, 184-189. doi:10.1016/j.jgar.2015.05.002

Chen MM, Boardman WS, Brown MH (2016) Methicillin resistance gene diversity in staphylococci isolated from captive and free- ranging wallabies. Infection Ecology & Epidemiology 6, 31507. doi:10.3402/iee.v6.31507

Conly JM, Johnston BL (2003) The emergence of methicillin-resistant Staphylococcus aureus as a community-acquired pathogen in Canada. The Canadian Journal of Infectious Diseases 14, 249-251. doi:10.1155/2003/197126

D’Costa VM, Mcgrann KM, Hughes DW, Wright GD (2006) Sampling the antibiotic resistome. Science 311, 374-377. doi:10.1126/ science.1120800

Delport T, Harcourt RG, Beaumont LJ, Webster KN, Power ML (2015) Molecular detection of antibiotic resistance determinants in Escherichia coli isolated from the endangered Australian sea lion Neophoca cinerea. Journal of Wildlife Diseases 51, 555-563. doi:10. 7589/2014-08-200

Department of Health (2019) Australia’s National Antimicrobial Resist­ance Strategy - 2020 and Beyond. Canberra, Australia..

Dolejska M, Bierosova B, Kohoutova L, Literak I, Cizek A (2009) Anti­biotic-resistant Salmonella and Escherichia coli isolates with inte­grons and extended-spectrum beta-lactamases in surface water and sympatric black-headed gulls. Journal of Applied Microbiology 106, 1941-1950. doi:10.1111/j.1365-2672.2009.04155.x

Dolejska M, Masarikova M, Dobiasova H, Jamborova I, Karpiskova R, Havlicek M, Carlile N, Priddel D, Cizek A, Literak I (2016) High prevalence of Salmonella and IMP-4-producing Enterobacteriaceae in the silver gull on Five Islands, Australia. The Journal of Antimi­crobial Chemotherapy 71, 63-70. doi:10.1093/jac/dkv306

Ferreira C, Otani S, Aarestrup FM, Manaia CM (2023) Quantitative PCR versus metagenomics for monitoring antibiotic resistance genes: balancing high sensitivity and broad coverage.

Florensa AF, Kaas RS, Clausen PTLC, Aytan-Aktug D, Aarestrup FM (2022) ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes. Microbial genomics 8, 000748. doi:10.1099/mgen.0.000748

Fulham M, Power M, Gray R (2018) Comparative ecology of Escheri­chia coli in endangered Australian sea lion (Neophoca cinerea) pups. Infection, Genetics and Evolution 62, 262-269. doi:10.1016/j. meegid.2018.05.002

Fulham M, McDougall F, Power M, McIntosh RR, Gray R (2022) Carriage of antibiotic resistant bacteria in endangered and declin­ing Australian pinniped pups. PLoS One 17, e0258978. doi:10.1371/ journal.pone.0258978

Gillings MR (2014) Integrons: past, present, and future. Microbiology and Molecular Biology Reviews 78, 257-277. doi:10.1128/MMBR. 00056-13

Gillings MR (2017) Lateral gene transfer, bacterial genome evolution, and the Anthropocene. Annals of the New York Academy of Sciences 1389, 20-36. doi:10.1111/nyas.13213

Gillings MR, Stokes HW (2012) Are humans increasing bacterial evolvability? Trends in Ecology & Evolution 27, 346-352. doi:10. 1016/j.tree.2012.02.006

Gillings MR, Boucher Y, Labbate M, Holmes A, Krishnan S, Holley M, Stokes HW (2008) The evolution of class 1 integrons and the rise of antibiotic resistance. Journal of Bacteriology 190, 5095-5100. doi:10.1128/JB.00152-08

Gillings MR, Gaze W, Pruden A, Smalla K, Tiedje JM (2014) Using the class 1 integron-integrase gene as a proxy for anthropogenic pollu­tion. The ISME Journal 78, 257-277.

Grillo T, Cox-Witton K, Gilchrist S, East I (2015) Animal Health Sur­veillance Quarterly Report 20, 6-8.

Guardabassi L (2012) Veterinary hospital-acquired infections: the challenge of MRSA and other multidrug-resistant bacterial infec­tions in veterinary medicine. Veterinary Journal 193, 307-308. doi:10.1016/j.tvjl.2012.04.005

Guenther S, Ewers C, Wieler LH (2011) Extended-spectrum beta-lacta­mases producing E.

Hernandez J, Prado V, Torres D, Waldenstrom J, Haemig PD, Olsen B (2007) Enteropathogenic Escherichia coli (EPEC) in Antarctic fur seals Arctocephalus gazella. Polar Biology 30, 1227-1229. doi:10. 1007/s00300-007-0282-2

Hiramatsu K, Cui L, Kuroda M, Ito T (2001) The emergence and evolu­tion of methicillin-resistant Staphylococcus aureus. Trends in Microbiology 9, 486-493. doi:10.1016/S0966-842X(01)02175-8

Hollenbeck BL, Rice LB (2012) Intrinsic and acquired resistance mecha­nisms in Enterococcus. Virulence 3, 421-569. doi:10.4161/viru.21282

Johnson SP, Nolan S, Gulland F (1998) Antimicrobial susceptibility of bacteria isolated from pinnipeds stranded in Central and Northern California. Journal of Zoo and Wildlife Medicine 29, 288-294.

Jones KE, Patel N, Levy M, Storeygard M, Balk D, Gittleman JL, Daszak P (2008) Global trends in emerging infectious diseases. Nature 451, 990-993. doi:10.1038/nature06536

Literak I, Dolejska M, Radimersky T, Klimes J, Friedman M, Aarestrup FM, Hasman H, Cizek A (2010) Antimicrobial-resistant faecal Escherichia coli in wild mammals in central Europe: multiresistant Escherichia coli producing extended-spectrum beta-lactamases in wild boars. Journal of Applied Microbiology 108, 1702-1711. doi:10.1111/j.1365-2672.2009.04572.x

Marti E, Variatza E, Balcazar JL (2014) The role of aquatic ecosystems as reservoirs of antibiotic resistance. Trends in Microbiology 22, 36-41. doi:10.1016/j.tim.2013.11.001

Mazel D (2006) Integrons: agents of bacterial evolution. Nature Reviews: Microbiology 4, 608-620. doi:10.1038/nrmicro1462

McDougall F, Boardman W, Gillings M, Power M (2019) Bats as reser­voirs of antibiotic resistance determinants: a survey of class 1 inte­grons in Grey-headed Flying Foxes (Pteropus poliocephalus). Infection, Genetics and Evolution 70, 107-113. doi:10.1016/j. meegid.2019.02.022

McDougall FK, Boardman WS, Power ML (2021a) Characterization of beta-lactam-resistant Escherichia coli from Australian fruit bats indicates anthropogenic origins.

McDougall FK, Wyres KL, Judd LM, Boardman WS, Holt KE, Power ML (2021b) Novel strains of Klebsiella africana and Klebsiella pneumoniae in Australian fruit bats (Pteropus poliocephalus). Research in Microbiology 172, 103879. doi:10.1016/j.

resmic.2021.103879

McDougall F, Boardman W, Power M (2022) High prevalence of beta­lactam-resistant Escherichia coli in South Australian grey-headed flying fox pups (Pteropus poliocephalus). Microorganisms 10, 1589. doi:10.3390/microorganisms10081589

McDougall FK, Boardman WS, Speight N, Stephenson T, Funnell O, Smith I, Graham PL, Power ML (2023) Carriage of antibiotic resist­ance genes to treatments for chlamydial disease in koalas (Phasco- larctos cinereus): a comparison of occurrence before and during catastrophic wildfires. One Health 17, 100652. doi:10.1016/j. onehlt.2023.100652

McDougall FK, Speight N, Funnell O, Boardman WS, Power ML (2024) Dynamics of antimicrobial resistance carriage in koalas (Phasco- larctos cinereus) and pteropid bats (Pteropus poliocephalus) before, during and after wildfires. Microbial Ecology 87, 1-15. doi:10.1007/ s00248-024-02351-w

McGowan AM, Seddon JM, Lanyon JM, Clark N, Gibson JS (2023) Identification of antimicrobial resistance in faecal microbes from wild dugongs (Dugong dugon). Aquatic Mammals 49, 395-405. doi:10.1578/AM.49.4.2023.395

McWhorter A, Owens J, Valcanis M, Olds L, Myers C, Smith I, Trott D, McLelland D (2021) In vitro invasiveness and antimicrobial resist­ance of Salmonella enterica subspecies isolated from wild and captive reptiles. Zoonoses and Public Health 68, 402-412. doi:10.1111/zph.12820

Moellering RC (1992) Emergence of Enterococcus as a significant pathogen. Clinical Infectious Diseases 14, 1173-1178. doi:10.1093/ clinids/14.6.1173

Munoz-Price S, Poirel L, Bonomo RA, Schwaber MJ, Daikos GL, Cormican G, Garau J, Gniadkowski M, Hayden MK, Kumarasamy K, Livermore DM, Maya JJ, Nordmann P, Patel JB, Paterson DL, Pitout J, Villegas MV, Wang H, Woodford N, Quinn JP (2013) Clinical epidemiology of the global expansion of Klebsiella pneu­moniae carbapenemases.

Nordmann P, Naas T, Poirel L (2011) Global spread of carbapenemase- producing Enterobacteriaceae. Emerging Infectious Diseases 17, 1791-1798. doi:10.3201/eid1710.110655

Oravcova V, Svec P, Literak I (2017) Vancomycin-resistant enterococci with vanA and vanB genes in Australian gulls. Environmental Microbiology Reports 9, 316-318. doi:10.1111/1758-2229.12542

Osterblad M, Norrdahl K, Korpimaki E, Huovinen P (2001) Antibiotic resistance: how wild are wild mammals? Nature 409, 37-38. doi:10.1038/35051173

Perry JA, Wright GD (2013) The antibiotic resistance “mobilome”: searching for the link between environment and clinic. Frontiers in Microbiology 4, 138. doi:10.3389/fmicb.2013.00138

Piddock LVJ (2016) Assess drug-resistance phenotypes, not just geno­types. Nature Microbiology 1, 16120. doi:10.1038/nmicrobiol.2016.120

Platell JL, Cobbold RN, Johnson JR, Heisig A, Heisig P, Clabots C, Kuskowski MA, Trott DJ (2011) Commonality among fluoroqui­nolone-resistant sequence type ST131 extraintestinal Escherichia coli isolates from humans and companion animals in Australia. Antimicrobial Agents and Chemotherapy 55, 3782-3787. doi:10.1128/ aac.00306-11

Power ML, Emery S, Gillings MR (2013) Into the wild: dissemination of antibiotic resistance determinants via a species recovery program. PLoS One 8, e63017. doi:10.1371/journal.pone.0063017

Radhouani H, Silva N, Poeta P, Torres C, Correia S, Igregas G (2014) Potential impact of antimicrobial resistance in wildlife, environ­ment and human health. Frontiers in Microbiology 5, 23. doi:10. 3389/fmicb.2014.00023

Schmieder R, Edwards R (2012) Insights into antibiotic resistance through metagenomic approaches. Future Microbiology 7, 73-89. doi:10.2217/fmb.11.135

Sherley M, Gordon DM, Collignon PJ (2000) Variations in antibiotic resistance profile in Enterobacteriaceae isolated from wild Austral­ian mammals. Environmental Microbiology 2, 620-631. doi:10.1046/ j.1462-2920.2000.00145.x

Skurnik D, Ruimy R, Andremont A, Amorin C, Rouquet P, Picard B, Denamur E (2006) Effect of human vicinity on antimicrobial resist­ance and integrons in animal faecal Escherichia coli. The Journal of Antimicrobial Chemotherapy 57, 1215-1219. doi:10.1093/jac/dkl122

Stock I, Wiedemann B (2001) Natural antibiotic susceptibility of Kleb­siella pneumoniae, K. oxytoca, K. planticola, K. ornithinolytica and K. terrigena strains. Journal of Medical Microbiology 50, 396-406. doi:10.1099/0022-1317-50-5-396

Takle GL, Suedmeyer WK, Hunkeler A (2010) Selected diagnostic oph­thalmic tests in the red kangaroo (Macropus rufus). Journal of Zoo and Wildlife Medicine 41, 224-233. doi:10.1638/2009-0105R1.1

Tenover FC (2006) Mechanisms of antimicrobial resistance in bacteria. American Journal of Infection Control 34, S3-S10. doi:10.1016/j. ajic.2006.05.219

World Health Organization (WHO) (2024) WHO Bacterial Priority Pathogens List, 2024: bacterial pathogens of public health impor­tance to guide research, development and strategies to prevent and control antimicrobial resistance. Geneva, Switzerland..

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